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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3531444_3532616_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3531444 - 3532616
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
ATTCTCTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTGTCTGAATT
Flanking Amino Acid:
MWPNGAEGWKEPVAPAPPGS
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
70
0.45
0.9
63.1
38
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
61.5
0.44
1.5
75.82
41.6

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047926
3523646 - 3574318
50673
ENSAPLT00000030174
3523646 - 3574292
50647
ENSAPLT00000022275
3526825 - 3540839
14015
ENSAPLT00000021323
3523646 - 3595442
71797