Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3533233_3533311_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3533233 - 3533311

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGAGC

5'SS Class:

major

3'SS Sequence:

CGCGCCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

AGCCCCTCACCG

Flanking Amino Acid:

TSKKEPGFMKKAESEELETQ

Intron Amino Acid Position:

1023

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

63.9

42.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

0.27

0.9

53.9

Minor 5ss

25.8

-2.8

3.2

33.4

42.1

Minor BPS

45.9

-0.4

1.9

48.49

44.5

Associated Gene:

Gene:

SRCIN1

Ensembl Gene ID:

ENSAPLG00000026819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030174

3523646 - 3574292

50647

ENSAPLT00000022275

3526825 - 3540839

14015

ENSAPLT00000021574

3523646 - 3595442

71797

ENSAPLT00000021323

3523646 - 3595442

71797

ENSAPLT00000047926

3523646 - 3574318

50673