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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3533854_3534169_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3533854 - 3534169
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CCGGCTGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
CCGGGCTGCAGG
Flanking Amino Acid:
KSADKAVSVEAAERDWEEKR
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
63.4
0.3
1
56.4
38.7
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
31.3
-1.6
2.2
26.53
42.6

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030174
3523646 - 3574292
50647
ENSAPLT00000022275
3526825 - 3540839
14015
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673