Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3534483_3535365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3534483 - 3535365

Intron Length:

883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

GCTGCAGTGACC

Flanking Amino Acid:

TVTDTLAQIRRQVDEGVWTP

Intron Amino Acid Position:

783

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.3

35.8

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

76.7

0.6

0.8

30.9

Minor 5ss

32.2

-2

3.3

41.8

45.1

Minor BPS

43.6

-0.5

2.3

55.33

43.2

Associated Gene:

Gene:

SRCIN1

Ensembl Gene ID:

ENSAPLG00000026819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030174

3523646 - 3574292

50647

ENSAPLT00000022275

3526825 - 3540839

14015

ENSAPLT00000021574

3523646 - 3595442

71797

ENSAPLT00000021323

3523646 - 3595442

71797

ENSAPLT00000047926

3523646 - 3574318

50673