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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3535514_3536391_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3535514 - 3536391
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TCTCCCACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGCCCCCTGACC
Flanking Amino Acid:
QLGETLTDLKAQFPSLQSKM
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.6
41.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
72.3
0.5
0.8
65.6
28.7
Minor 5ss
25.7
-2.8
2.9
22.3
37.3
Minor BPS
54.9
0.14
1.7
65.37
40

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022275
3526825 - 3540839
14015
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673
ENSAPLT00000030174
3523646 - 3574292
50647