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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3536523_3536761_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3536523 - 3536761
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TTTGTGCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GCAGCAGTGACA
Flanking Amino Acid:
NEEELITQQLNDLEKSVEKI
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.2
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
79
0.65
0.9
73.2
37.2
Minor 5ss
39.3
-1.2
3
49
41.4
Minor BPS
41.3
-0.6
2.2
48.7
41.8

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030174
3523646 - 3574292
50647
ENSAPLT00000022275
3526825 - 3540839
14015
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673