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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3536938_3537089_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3536938 - 3537089
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GCAGCCTGACCC
Flanking Amino Acid:
NQLQQLKKLQLQNQETVKTM
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
64.1
0.32
0.8
53.8
29.8
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
46.6
-0.2
1.8
52.69
44.4

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022275
3526825 - 3540839
14015
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673
ENSAPLT00000030174
3523646 - 3574292
50647