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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3537642_3537752_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3537642 - 3537752
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
TCTGCATTCACC
Flanking Amino Acid:
LLRGSEAETPSEKTEATNGG
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
69.9
0.5
1
73
31.5
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
50.4
-0
2.2
67.13
44.6

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673
ENSAPLT00000030174
3523646 - 3574292
50647
ENSAPLT00000022275
3526825 - 3540839
14015