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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3539534_3540062_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3539534 - 3540062

Intron Length:

529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGGGC

5'SS Class:

major

3'SS Sequence:

CCTCTGCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

TGCCGGCTCACG

Flanking Amino Acid:

RNVFYELEDVRDIQDRSIIK

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

58.8

40.6

Major BPS

52.1

0.05

1.3

41.8

Major PPT

78.9

0.65

0.8

72.2

32.4

Minor 5ss

24.6

-2.9

3.4

32.5

42.6

Minor BPS

31.9

-1.5

2.6

37.79

44.6

Associated Gene:

Gene:

SRCIN1

Ensembl Gene ID:

ENSAPLG00000026819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030174

3523646 - 3574292

50647

ENSAPLT00000022275

3526825 - 3540839

14015

ENSAPLT00000021574

3523646 - 3595442

71797

ENSAPLT00000021323

3523646 - 3595442

71797

ENSAPLT00000047926

3523646 - 3574318

50673