Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3540570_3564704_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3540570 - 3564704

Intron Length:

24135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CTCCCCTCACCT

Flanking Amino Acid:

RGQQERMRDQTRSSRHSQGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

73.9

36.8

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

80.2

0.68

0.8

73.5

31.4

Minor 5ss

29.6

-2.3

3.5

41.1

45.6

Minor BPS

50.4

0.09

1.9

69.41

47.1

Associated Gene:

Gene:

SRCIN1

Ensembl Gene ID:

ENSAPLG00000026819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047926

3523646 - 3574318

50673

ENSAPLT00000021323

3523646 - 3595442

71797