Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3564989_3585949_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3564989 - 3585949

Intron Length:

20961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCGCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

GGGTCCTGACCC

Flanking Amino Acid:

GLCSLCLKSPDPDRTSTHMI

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

1.1

Major BPS

68.9

0.47

59.2

39.1

Major PPT

70.4

0.46

0.9

65.1

30.5

Minor 5ss

33.4

-1.9

2.4

38.7

Minor BPS

51.7

0.03

1.8

61.03

43.7

Associated Gene:

Gene:

SRCIN1

Ensembl Gene ID:

ENSAPLG00000026819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021574

3523646 - 3595442

71797