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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3586013_3594791_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3586013 - 3594791
Intron Length:
8779

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTGTCCCTAACC
Flanking Amino Acid:
GAAMGNTPSQGLDRIAGGKK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
1
72
42.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
66.7
0.38
1
59.7
40.7
Minor 5ss
30.3
-2.3
3.8
43.3
44.4
Minor BPS
67.4
0.53
1.7
75.12
41.7

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021574
3523646 - 3595442
71797