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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3653296_3654002_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3653296 - 3654002
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTCCTCTTGATT
Flanking Amino Acid:
HGCRQAFHVTCAQMAGLLCE
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.1
0.61
0.9
73.7
40.5
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
61.7
0.45
1.3
71.44
40.3

Associated Gene:

Gene:
MLLT6
Ensembl Gene ID:
ENSAPLG00000008636
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009037
3644611 - 3683965
39355