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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3673622_3674367_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3673622 - 3674367
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
TGTTTTGCCATG
Flanking Amino Acid:
SSSSSVSTTQVFSLAGSTFS
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
75.9
0.58
0.9
71.1
34.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
38
-1
2.3
46.95
41.1

Associated Gene:

Gene:
MLLT6
Ensembl Gene ID:
ENSAPLG00000008636
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009037
3644611 - 3683965
39355