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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3674486_3677978_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3674486 - 3677978
Intron Length:
3493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTCTCCCCACGC
Flanking Amino Acid:
LLNQSESSRAEPDLEDCSFG
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.8
32.3
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
71.3
0.48
0.8
65.9
28.9
Minor 5ss
30.9
-2.2
3.3
40
46.1
Minor BPS
40
-0.7
2.2
50.84
46.1

Associated Gene:

Gene:
MLLT6
Ensembl Gene ID:
ENSAPLG00000008636
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009037
3644611 - 3683965
39355