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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3678965_3679157_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3678965 - 3679157
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCACCCCTGACT
Flanking Amino Acid:
SQAQYILPANVCNNDSLSIS
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.1
0.79
0.7
76.9
31.8
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
51.8
0.14
1.7
66.37
44.1

Associated Gene:

Gene:
MLLT6
Ensembl Gene ID:
ENSAPLG00000008636
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009037
3644611 - 3683965
39355