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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3682077_3682920_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3682077 - 3682920
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TGTTTTTTAAAG
Flanking Amino Acid:
QADGNTPKGTSMNEKGAPLT
Intron Amino Acid Position:
1039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
69.3
42.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
80.3
0.68
1
82.2
33.3
Minor 5ss
33.3
-1.9
3
42.4
44.5
Minor BPS
66.7
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
MLLT6
Ensembl Gene ID:
ENSAPLG00000008636
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009037
3644611 - 3683965
39355