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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3717075_3717695_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3717075 - 3717695
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTGTTCTGACTT
Flanking Amino Acid:
AHAAKTVKHGAGAEISTVNP
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
51
0.11
1.7
68.84
42.5

Associated Gene:

Gene:
PIP4K2B
Ensembl Gene ID:
ENSAPLG00000003913
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018440
3713450 - 3725380
11931