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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3717075_3718158_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3717075 - 3718158
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTGTTCTGACTT
Flanking Amino Acid:
VDVYAMKSHESWGRDLHRQP
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
51
0.11
1.7
68.84
42.5

Associated Gene:

Gene:
PIP4K2B
Ensembl Gene ID:
ENSAPLG00000003913
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004033
3716462 - 3725347
8886