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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3739132_3739596_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3739132 - 3739596
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTCTCCTGAAGG
Flanking Amino Acid:
PTKVPGYGLQVRDSDLSHKS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.3
0.75
0.9
74.5
40
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
54.1
-0
1.9
59.75
47.8

Associated Gene:

Gene:
CWC25
Ensembl Gene ID:
ENSAPLG00000003710
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003806
3736971 - 3741870
4900