About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3739667_3739904_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3739667 - 3739904
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCAAAA
Flanking Amino Acid:
TSSDDERSKARSQKKMNSSS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.8
0.54
0.9
74.4
36.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
50.7
0.02
2
70.5
41.2

Associated Gene:

Gene:
CWC25
Ensembl Gene ID:
ENSAPLG00000003710
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003806
3736971 - 3741870
4900