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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3741098_3741360_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3741098 - 3741360
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
AGCTCTGTAATA
Flanking Amino Acid:
QRYAEDMGTVRKREEKLEWM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
73.9
0.54
1
70
40.3
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
51
0.03
2
61.75
39.2

Associated Gene:

Gene:
CWC25
Ensembl Gene ID:
ENSAPLG00000003710
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003806
3736971 - 3741870
4900