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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3752102_3752304_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3752102 - 3752304
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GTGCTCCCAACA
Flanking Amino Acid:
KLSKAIVLQKTIDYIQFLHK
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
84.2
0.77
0.8
84.4
30.5
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
46.8
-0.2
1.9
58.64
40.5

Associated Gene:

Gene:
MLX
Ensembl Gene ID:
ENSAPLG00000003549
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003625
3751075 - 3754015
2941