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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3752405_3752696_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3752405 - 3752696
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCG
5'SS Class:
major
3'SS Sequence:
GCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
ACACCCCAAACA
Flanking Amino Acid:
AEQKRRDAIKKGYDDLQAIV
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
57.2
47.5
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
72.7
0.51
0.8
65.9
30.2
Minor 5ss
43.7
-0.7
2.9
57.5
46.7
Minor BPS
46.8
-0.2
2
57.06
41.7

Associated Gene:

Gene:
MLX
Ensembl Gene ID:
ENSAPLG00000003549
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003625
3751075 - 3754015
2941