Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3757535_3757923_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3757535 - 3757923

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGGG

5'SS Class:

major

3'SS Sequence:

CCTCGTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGAACAA

U12 Branch Point Sequence:

TGGCCAGGAACA

Flanking Amino Acid:

RKEIGEADAQGKAVCVLDAA

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.2

47.1

Major BPS

41.7

-0.5

1.2

41.1

39.7

Major PPT

75.9

0.58

0.8

68.9

31.6

Minor 5ss

41.3

-1

3.3

55.9

48.3

Minor BPS

42.6

-0.5

2.2

56.12

42.2

Associated Gene:

Gene:

COASY

Ensembl Gene ID:

ENSAPLG00000029143

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030544

3756754 - 3760995

4242