About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3757611_3758645_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3757611 - 3758645
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGGCAAACGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
AACCCCCTGATA
Flanking Amino Acid:
VLGAKVFGNQPPKAARGALV
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
52.7
0.06
1.1
44.7
40.6
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
48.5
-0.1
1.6
55.86
36.6

Associated Gene:

Gene:
COASY
Ensembl Gene ID:
ENSAPLG00000029143
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030909
3756754 - 3760995
4242