Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3758006_3758645_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3758006 - 3758645

Intron Length:

640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCCAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

GAGCTCTGAACC

Flanking Amino Acid:

VLGAKVFGNQRLKSLTDIVW

Intron Amino Acid Position:

387

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

69.8

0.49

37.5

Major PPT

51.6

0.04

1.7

62.3

33.3

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

0.1

1.5

58.81

39.4

Associated Gene:

Gene:

COASY

Ensembl Gene ID:

ENSAPLG00000029143

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030544

3756754 - 3760995

4242