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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3762410_3762487_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3762410 - 3762487
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACT
5'SS Class:
major
3'SS Sequence:
CGCTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CGGCTCTCAAAG
Flanking Amino Acid:
VVTGSVGGLQGVPFNSVYCA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
71.4
40.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
66.3
0.37
0.9
57
38.7
Minor 5ss
35.2
-1.7
3.2
49
47
Minor BPS
44.7
-0.5
1.7
42.82
42

Associated Gene:

Gene:
HSD17B1
Ensembl Gene ID:
ENSAPLG00000016530
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027012
3761649 - 3763302
1654