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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3763049_3763205_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3763049 - 3763205
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAGCAC
U12 Branch Point Sequence:
GGCGGCAGCACT
Flanking Amino Acid:
LAADSARRFKVFATMRDLAK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
39.4
-0.6
1.3
39.4
40.4
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
34.2
-1.1
2.2
46.99
44.6

Associated Gene:

Gene:
HSD17B1
Ensembl Gene ID:
ENSAPLG00000016530
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027012
3761649 - 3763302
1654