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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3765624_3765721_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3765624 - 3765721
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TCTCCGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CGTGCCTCACCC
Flanking Amino Acid:
SNAVFRSMTGADPEALWLMQ
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
73.8
0.54
0.8
65
36.3
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
48
-0.1
2
59.01
45.8

Associated Gene:

Gene:
NAGLU
Ensembl Gene ID:
ENSAPLG00000031189
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037322
3764407 - 3770767
6361