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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3765979_3766142_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3765979 - 3766142
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTGCG
5'SS Class:
major
3'SS Sequence:
CCCTCCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGCTCCTGATCC
Flanking Amino Acid:
FAGHVPPGVLRVFPRVNATR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
61.2
43.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
69.8
0.45
0.9
67.8
32.2
Minor 5ss
32.4
-2
3.3
41.7
44.8
Minor BPS
57.9
0.23
1.8
68.17
43

Associated Gene:

Gene:
NAGLU
Ensembl Gene ID:
ENSAPLG00000031189
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037322
3764407 - 3770767
6361