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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3766229_3766355_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3766229 - 3766355
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TCCTCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCCT
U12 Branch Point Sequence:
TCTTCCTCCCCT
Flanking Amino Acid:
SWHLKQLYLQYRVVERMRSL
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
34.6
-0.9
4.2
73.6
41.8
Major PPT
80
0.67
0.7
72.3
32.3
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
41.8
-0.5
3.7
75.75
46.8

Associated Gene:

Gene:
NAGLU
Ensembl Gene ID:
ENSAPLG00000031189
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037322
3764407 - 3770767
6361