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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3766800_3770480_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3766800 - 3770480
Intron Length:
3681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGTGAGTA
5'SS Class:
weak_major
3'SS Sequence:
CGTAACGGGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACGTAA
U12 Branch Point Sequence:
CCTTACGTAACG
Flanking Amino Acid:
EALHTYLDCLPQRGAGVPPT
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.1
0.1
1.3
55.2
38
Major BPS
49.8
-0
1.3
49.6
37.6
Major PPT
40.8
-0.5
1.7
34.7
40.7
Minor 5ss
36.5
-1.5
3.5
50.8
46.1
Minor BPS
49.2
-0.2
2.3
59.76
47.8

Associated Gene:

Gene:
NAGLU
Ensembl Gene ID:
ENSAPLG00000031189
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037322
3764407 - 3770767
6361