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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3784860_3785086_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3784860 - 3785086
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCCCATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCCGCCTGAGCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
59.9
39.3
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
67.6
0.4
0.8
60.8
28.9
Minor 5ss
32.2
-2
2.9
42.7
37.7
Minor BPS
46
-0.3
1.8
50.45
46.3

Associated Gene:

Gene:
CNTNAP1
Ensembl Gene ID:
ENSAPLG00000014030
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014657
3784267 - 3792502
8236