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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3785281_3785386_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3785281 - 3785386
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGAGCC
5'SS Class:
major
3'SS Sequence:
CTTTGTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGGCCCCACACT
Flanking Amino Acid:
KPFFQQGSNWTFFGNVNESG
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.7
39.5
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
78
0.63
0.8
69.6
36.8
Minor 5ss
29.9
-2.3
3.5
33.9
41.8
Minor BPS
42.9
-0.4
2.3
62.87
46.6

Associated Gene:

Gene:
CNTNAP1
Ensembl Gene ID:
ENSAPLG00000014030
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014657
3784267 - 3792502
8236