Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3789705_3789787_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3789705 - 3789787

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGAGAC

5'SS Class:

major

3'SS Sequence:

GTCCCGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAG

U12 Branch Point Sequence:

GGGCGCTGAGTC

Flanking Amino Acid:

HLEFDRPLYVGAAEHKMRPF

Intron Amino Acid Position:

835

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

65.9

33.7

Major BPS

-0.2

1.6

40.4

42.3

Major PPT

65.5

0.35

57.3

38.6

Minor 5ss

25.8

-2.8

3.2

33.4

Minor BPS

39.7

-0.8

1.9

42.44

38.1

Associated Gene:

Gene:

CNTNAP1

Ensembl Gene ID:

ENSAPLG00000014030

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014657

3784267 - 3792502

8236