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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3790028_3790112_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3790028 - 3790112
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
GGATCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGGGAT
U12 Branch Point Sequence:
ACCCCCGTCACC
Flanking Amino Acid:
SAFDGPFCNHDIGGYFEEGT
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
39.7
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
63
0.29
0.9
55
36.2
Minor 5ss
37.1
-1.5
3
51
45.2
Minor BPS
44.3
-0.4
2.3
53.53
44.3

Associated Gene:

Gene:
CNTNAP1
Ensembl Gene ID:
ENSAPLG00000014030
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014657
3784267 - 3792502
8236