About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3795183_3795311_R


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3795183 - 3795311

Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTAACTCAC

5'SS Class:
major

3'SS Sequence:
TGCCTTTCGACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCGCAG

U12 Branch Point Sequence:
TGCCTTTCGACA

Flanking Amino Acid:
MSSFLFNLNNDFVVDATRKG

Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.2
0.55
1.2
65
41.1

Major BPS
48.4
-0.1
1.7
65.3
43.7

Major PPT
71.8
0.49
1
68.1
37.6

Minor 5ss
40.2
-1.1
2.9
49.9
40.8

Minor BPS
47.8
-0.1
1.5
56.04
37

Associated Gene:

Gene:
EZH1

Ensembl Gene ID:

Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3793713 - 3805566
11854