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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3795986_3796450_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3795986 - 3796450
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCG
5'SS Class:
major
3'SS Sequence:
GTCTTGGCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCAAA
U12 Branch Point Sequence:
CCCACCCAAACT
Flanking Amino Acid:
NCSIQRGLKKHLLLAPSDVA
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.3
40
Major BPS
46.5
-0.2
1.2
50.7
31.8
Major PPT
67.3
0.39
1
58.1
43.2
Minor 5ss
39.2
-1.2
3
50.4
46
Minor BPS
45.9
-0.2
2.1
60.79
48.5

Associated Gene:

Gene:
EZH1
Ensembl Gene ID:
ENSAPLG00000013797
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014466
3793713 - 3805566
11854