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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3801701_3802598_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3801701 - 3802598
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAC
U12 Branch Point Sequence:
TCCAGCATAACC
Flanking Amino Acid:
TRKRKRTAAEGNKKCSKKRF
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
49
-0
1.3
51.9
39.9
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
47.7
-0.2
2.1
59.87
45.2

Associated Gene:

Gene:
EZH1
Ensembl Gene ID:
ENSAPLG00000013797
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014466
3793713 - 3805566
11854