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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3804529_3804765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3804529 - 3804765
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
PVSGHPFLKQCTVESIFPGF
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.4
0.71
0.8
73.3
37.1
Minor 5ss
30.2
-2.3
3.3
39.5
46.1
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
EZH1
Ensembl Gene ID:
ENSAPLG00000013797
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014466
3793713 - 3805566
11854