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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3804895_3805445_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3804895 - 3805445
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCCCTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGATTTTTAAGT
Flanking Amino Acid:
KRFQANMGAKALFVANFAKV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.9
0.65
0.8
76
32.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
63.9
0.51
1.6
76.8
39.9

Associated Gene:

Gene:
EZH1
Ensembl Gene ID:
ENSAPLG00000013797
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014466
3793713 - 3805566
11854