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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3843673_3843972_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3843673 - 3843972
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGCTAATCAACT
Flanking Amino Acid:
KGETRFCLPYRMDVEKGKIE
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78
0.63
1
73.7
40.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
49.4
0.03
2
71.74
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004560
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004683
3843062 - 3847134
4073