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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3844626_3844709_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3844626 - 3844709
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACGCA
5'SS Class:
major
3'SS Sequence:
CGTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAA
U12 Branch Point Sequence:
TAAGGCTCACCC
Flanking Amino Acid:
LANKMGLKFQRYRLVPYGNH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.5
39.8
Major BPS
58.3
0.21
1.1
49.4
37.6
Major PPT
80.7
0.69
0.8
77
31.7
Minor 5ss
34.9
-1.7
3.5
47.9
47.7
Minor BPS
42.3
-0.6
2.2
52.48
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004560
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004683
3843062 - 3847134
4073