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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3845188_3845412_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3845188 - 3845412
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
GTTTCCTTCGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAG
U12 Branch Point Sequence:
AGCCTCGTACCC
Flanking Amino Acid:
EAERLEQEEAQYQKEYCEFK
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
49.2
-0
1.6
59
44.6
Major PPT
60
0.23
1.7
69.2
36.9
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
42.4
-0.5
2.1
50.09
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004560
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004683
3843062 - 3847134
4073