About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3846372_3846659_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3846372 - 3846659
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
AATTCGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAAAT
U12 Branch Point Sequence:
TCCCGGTGAAAT
Flanking Amino Acid:
GVSRRFIPPARMMSTESANS
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
68.8
0.42
0.9
58.8
42.1
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
38.9
-0.7
2.4
55.15
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004560
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004683
3843062 - 3847134
4073