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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3849152_3849647_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3849152 - 3849647
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATTAAAC
Flanking Amino Acid:
KLLELDGFLKEPILNIHDLT
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
40.9
-1
3
52.6
38.2
Minor BPS
61
0.33
1.8
68.75
42.5

Associated Gene:

Gene:
PSME3
Ensembl Gene ID:
ENSAPLG00000030012
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031303
3847565 - 3852737
5173