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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3849753_3850677_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3849753 - 3850677
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GGCTGACTGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGGGGCTGACTG
Flanking Amino Acid:
LTNSHDGLDGLFVSSAPVGT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.5
36.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
44.3
-0.3
1.7
43
42.4
Minor 5ss
42.2
-0.9
3.4
56.2
48
Minor BPS
39
-0.9
2.1
40.18
44.2

Associated Gene:

Gene:
PSME3
Ensembl Gene ID:
ENSAPLG00000030012
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031303
3847565 - 3852737
5173