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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3851678_3851827_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3851678 - 3851827
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TTTGTCTGACCT
Flanking Amino Acid:
EAASYLDQISRYYITRAKLV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
78.2
0.63
0.9
71.2
39.6
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
57.1
0.3
1.9
80.07
42.1

Associated Gene:

Gene:
PSME3
Ensembl Gene ID:
ENSAPLG00000030012
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031303
3847565 - 3852737
5173