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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3852217_3852656_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3852217 - 3852656
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTTTTCTGAGTT
Flanking Amino Acid:
LIISELRNQYVTLHDMILKN
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
87.2
0.84
0.7
83.5
24.7
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
57.4
0.31
1.7
76.16
41

Associated Gene:

Gene:
PSME3
Ensembl Gene ID:
ENSAPLG00000030012
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031303
3847565 - 3852737
5173